| Date | Presenter(s) | Topic |
|---|---|---|
| January 12 |
Dan Mishmar Ben-Gurion Univ. of the Negev Host: The Center for Medical Genomics Zoom URL |
Mitochondrial Transcriptional Regulation - More Complex Than Once Thought |
| January 17 4:00 pm |
Sally Mackenzie Penn State University Zoom URL |
Decoding Cytosine Methylation Toward Epigenetic Memory in Plants |
| January 24 4:00 pm |
Christopher (Casey) Brown University of Pennsylvania Zoom URL |
Gene Expression as a Model and a Tool for the Dissection of Complex Trait Mechanisms |
| January 31 4:00 pm |
Naomi Yamada & Alexandre Harris Penn State University Zoom URL |
Titles: Characterizing Protein-DNA Binding Event Subtypes in ChIP-exo Data and Detection and Classification of Recent Selective Sweeps in Ancestral and Modern Populations from Unphased Genomes |
| February 7 4:00 pm |
Molly Hall Penn State University Zoom URL |
Beyond Genome-wide Association Studies: Computational Tools To Identify Complex Associations Predictive Of Common Disease |
| February 14 4:00 pm |
David Koslicki Oregon State Univ. Host: The Center for Medical Genomics Zoom URL |
CMash: Probabilistic Analysis of Metagenomic Data |
| February 21 4:00 pm |
Dajiang Liu Penn State College of Medicine Host: CCBB Zoom URL |
Efficient Computational Methods for Biobank Scale Datasets |
| February 28 4:00 pm |
Lin An & Lila Rieber Penn State University Zoom URL |
LIN AN: Uncovering the Hierarchical Conformation of Topologically Associating Domains from Hi-C Data; LILA RIEBER: Locus-specific Changes in 3D Chromosome Conformation |
| March 14 4:00 pm |
CANCELLED Gregory Cooper CANCELLED HudsonAlpha Institute for Biotechnology Zoom URL |
CANCELLED Genomic Diagnosis of Developmental Disabilities |
| March 21 4:00 pm |
Kristoffer Sahlin Penn State University Host: The Center for Medical Genomics Zoom URL |
IsoCon: Deciphering Highly Similar Multigene Family Transcripts from Iso-Seq Data |
| March 28 4:00 pm |
Rahul Vegesna & Xiaoheng Cheng Penn State University Zoom URL |
Rahul: Expression and Copy Number Variation in Ampliconic Genes on the Y Chromosome of Great Apes; Xiaoheng: Detecting Shared Balancing Selection in the Absence of Trans-species Polymorphisms |
| April 4 4:00 pm |
CANCELED: Lauren Weiss University of CA, San Francisco Zoom URL |
The pERKs of Being a Modifier... and Other Stories from Complex Trait Genetics |
| April 11 4:00 pm |
Peter Wilton University of California, Berkeley Host: The Center for Medical Genomics Zoom URL |
A Population-Phylogenetic Approach to Understanding Mitochondrial Heteroplasmy |
| April 18 4:00 pm |
CANCELED: Harold Pimentel Stanford University Host: Shaun Mahony, CCBB Zoom URL |
Fast and Accurate RNA-Seq Analysis with Kallisto and Sleuth |
| April 25 4:00 pm |
Hillary Koch & Yafei Lyu Penn State University Zoom URL |
Hillary: A Model-Based Approach to Comparative Analysis of the Clone Size Distribution of the T Cell Receptor Repertoire Yafei: Condition-adaptive Fused Graphical Lasso (CFGL): An Adaptive Procedure for Inferring Condition-specific Gene Co-expression Network |
| May 2 4:00 pm |
Mingyao Li University of Pennsylvania Host: Qunhua Li, CCBB Zoom URL |
Statistical Modeling of Cellular Heterogeneity by Single-cell RNA Sequencing |
| May 9 4:00 pm |
Jian Ma Carnegie Mellon Univ. Host: Dr. Feng Yue, CCBB Zoom URL |
Algorithms for Probing Nuclear Genome Organization |
| May 16 4:00 pm |
Matthias Weissensteiner Uppsala University, Sweden Host: The Center for Medical Genomics Zoom URL |
Crow Genomics – Populations, Phenotypes and Genome Structure |
| May 23 4:00 pm |
Fan Song & Guanjue Xiang Penn State University Zoom URL |
Fan Song: The Role of MeCP2 in Chromatin Conformation; Guanjue Xiang: PKnorm: Normalizing Sequencing Depth and Signal-to-noise Ratio Between Epigenomic Data |
| June 1 |
Juilee Thakar University of Rochester Medical Center Host: The Center for Medical Genomics Zoom URL |
Making Sense of Human Immune Responses- High Dimensional Data, Knowledge and Computational Modeling |